The former Brazilian leader has been detained after authorities found he posed a definite escape threat while under home confinement.
The ex-president was found guilty of orchestrating a government overthrow in the ninth month and given more than over two decades in prison, but he remained under house arrest pending legal challenges.
High Court Judge Alexandre de Moraes said the move to detain the elderly politician was a precautionary step after recent developments emerged.
This included attempting to break his electronic bracelet and a call for a demonstration that could "allow for a chance to flee".
In a filing authorising the arrest, the judge said information from the centre monitoring the former president's confinement suggested the one-time head of state's "intention to break the tracking monitor to secure accomplishment in his flight.
This, it said, would be assisted by the confusion caused by the gathering called by his offspring.
His son, his son Flávio, who serves as a senator, called for a meeting of his supporters near his father's house to take place on Saturday evening.
Flávio Bolsonaro wrote on digital networks on the previous day: "Are you going to fight for your homeland, or see it all from your phone there on your settee? I call on you to struggle with us."
He said the demonstration would be so backers could seek divine intervention for his health and for the reestablishment of democratic governance in our country."
Part of the magistrate's determination was the potential of Bolsonaro's transfer to foreign missions near the dwelling, considering that the investigations revealed a background of planning to ask for protection through a diplomatic representation", a announcement said.
The judicial paperwork highlights that the US embassy in the national capital, Brasilia, is situated around approximately 13 kilometers from Bolsonaro's home.
His judicial problems have generated frustration from fellow right-wing populist American leader Trump, leading him to impose a 50% tariff on goods coming from Brazil.
The former president is being kept in a national police facility in the capital and will have a custody hearing on Sunday.
It was only on last Friday that the ex-leader's attorneys asked the Supreme Court to authorize him to fulfill his full incarceration period under home confinement, with tracking devices.
They also requested that Bolsonaro be permitted to exit his dwelling for medical care, saying he demanded ongoing care for pulmonary infections and other ailments.
He was found guilty of orchestrating a plot aimed at keeping him in power after he failed to win the 2022 election to his political opponent, President Lula.
High Court judges said that he had knowledge of a plot which encompassed plans to assassinate the current president and his vice-presidential running mate, Alckmin, and to detain and kill the presiding judge - the top judicial official who has been managing the former president's case.
The scheme was stopped because it didn't receive the endorsement of the army and air force commanders. Lula was inaugurated without problem on the first day of 2023.
But a following week, on 8 January, many Bolsonaro supporters invaded and destroyed government buildings in the capital, Brasília.
The security forces stepped in and around approximately 1,500 persons were detained.
The judges found that the protesters had been incited by him whose strategy, they said, was for the Brazilian military to intervene, restore order and reinstate his authority.
At the moment, Bolsonaro's lawyers called the 27 years and three months sentence unreasonably severe".
He was also banned from running for public office until 2060 - a decade minus two years after the conclusion of his imprisonment.
The ex-leader called the trial a "witch hunt and said it was designed to prevent him running in the 2026 national vote.
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